Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38

P100

Job Status

Created: 2019-04-26 11:20:43
Modified: 2019-04-26 11:24:07
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38
File Path: /data/labkey/files/00Developer/vsharma/LINCS module test/PSP/P100/@files/LincsPSP_LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_2019-04-26_11-20-43.log
Files: LincsPSP_LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_2019-04-26_11-20-43.log

Log File


26 Apr 2019 11:20:43,305 INFO : Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38
26 Apr 2019 11:20:43,306 INFO : =======================================
26 Apr 2019 11:20:43,716 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
26 Apr 2019 11:20:43,716 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38
26 Apr 2019 11:20:43,717 INFO : Submitting job for runId: 64917, name: LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38
26 Apr 2019 11:20:43,723 INFO : Looking for existing job with name LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_test
26 Apr 2019 11:20:44,639 INFO : Job with name LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_testexists.
26 Apr 2019 11:20:44,640 INFO : Looking for existing job with name LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_test_2
26 Apr 2019 11:20:44,740 INFO : Job with name LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_test_2exists.
26 Apr 2019 11:20:44,740 INFO : Looking for existing job with name LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_test_3
26 Apr 2019 11:20:44,840 INFO : Job with name LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_test_3exists.
26 Apr 2019 11:20:44,841 INFO : Looking for existing job with name LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_test_4
26 Apr 2019 11:20:44,939 INFO : PSP job name: LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_test_4
26 Apr 2019 11:20:44,940 INFO : Sending JSON:
26 Apr 2019 11:20:44,940 INFO : { "level 4": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/00Developer/vsharma/LINCS%20module%20test/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_LVL4.gct" }}, "assay": "P100", "name": "LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_test_4", "config": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/00Developer/vsharma/LINCS%20module%20test/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38.cfg" }}, "level 2": {"panorama": { "method": "GET", "url": "https://panoramaweb.org/lincs/00Developer/vsharma/LINCS%20module%20test/PSP/P100/runGCTReportApi.view?runId=64917&remote=true&reportName=GCT%20File%20P100" }}, "level 3": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/00Developer/vsharma/LINCS%20module%20test/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_LVL3.gct" }} }
26 Apr 2019 11:20:44,942 INFO : Sending POST request to https://api.clue.io/api/psp
26 Apr 2019 11:20:45,188 INFO : Response code - 200
26 Apr 2019 11:20:45,189 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_test_4","assay":"P100","status":"Waiting_To_Download","id":"5cc34bfd66200106fc8e3ed6","created":"2019-04-26T18:20:45.004Z","last_modified":"2019-04-26T18:20:45.004Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/00Developer/vsharma/LINCS%20module%20test/PSP/P100/runGCTReportApi.view?runId=64917&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/00Developer/vsharma/LINCS%20module%20test/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/00Developer/vsharma/LINCS%20module%20test/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/00Developer/vsharma/LINCS%20module%20test/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38.cfg"}}}
26 Apr 2019 11:20:45,192 INFO : Sent POST request to https://api.clue.io/api/psp
26 Apr 2019 11:20:45,195 INFO : Checking status of job 5cc34bfd66200106fc8e3ed6
26 Apr 2019 11:20:45,301 INFO : Status: Waiting_To_Download
26 Apr 2019 11:21:05,302 INFO : Checking status of job 5cc34bfd66200106fc8e3ed6
26 Apr 2019 11:21:05,543 INFO : Status: created LVL2 GCT
26 Apr 2019 11:21:25,543 INFO : Checking status of job 5cc34bfd66200106fc8e3ed6
26 Apr 2019 11:21:25,769 INFO : Status: created LVL2 GCT
26 Apr 2019 11:21:45,769 INFO : Checking status of job 5cc34bfd66200106fc8e3ed6
26 Apr 2019 11:21:45,999 INFO : Status: created LVL2 GCT
26 Apr 2019 11:22:06,000 INFO : Checking status of job 5cc34bfd66200106fc8e3ed6
26 Apr 2019 11:22:06,227 INFO : Status: created LVL2 GCT
26 Apr 2019 11:22:26,228 INFO : Checking status of job 5cc34bfd66200106fc8e3ed6
26 Apr 2019 11:22:26,509 INFO : Status: created LVL2 GCT
26 Apr 2019 11:22:46,510 INFO : Checking status of job 5cc34bfd66200106fc8e3ed6
26 Apr 2019 11:22:46,747 INFO : Status: created LVL2 GCT
26 Apr 2019 11:23:06,748 INFO : Checking status of job 5cc34bfd66200106fc8e3ed6
26 Apr 2019 11:23:07,042 INFO : Status: created LVL2 GCT
26 Apr 2019 11:23:27,043 INFO : Checking status of job 5cc34bfd66200106fc8e3ed6
26 Apr 2019 11:23:27,274 INFO : Status: created LVL2 GCT
26 Apr 2019 11:23:47,274 INFO : Checking status of job 5cc34bfd66200106fc8e3ed6
26 Apr 2019 11:23:47,511 INFO : Status: created LVL 3 GCT
26 Apr 2019 11:24:07,512 INFO : Checking status of job 5cc34bfd66200106fc8e3ed6
26 Apr 2019 11:24:07,749 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
26 Apr 2019 11:24:07,750 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
26 Apr 2019 11:24:07,750 INFO : Finished running LINCS PSP pipeline.
26 Apr 2019 11:24:07,750 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'