Skyline document import - LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23.sky.zip

CromwellTest

Job Status

Created: 2021-04-18 11:13:48
Modified: 2021-04-18 11:14:24
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Skyline document import - LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23.sky.zip
File Path: /data/labkey/files/00Developer/vsharma/LINCS module test/GCP/CromwellTest/@files/LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23.sky_2021-04-18_11-13-47.log
Files: LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23.sky_2021-04-18_11-13-47.log
Completed Runs: LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23.sky.zip

Log File


18 Apr 2021 11:13:48,380 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
18 Apr 2021 11:13:48,383 INFO : Starting to import Skyline document from LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23.sky.zip
18 Apr 2021 11:13:48,383 INFO : Expanding Histone2016.blib
18 Apr 2021 11:13:48,390 INFO : Expanding Histone2016.redundant.blib
18 Apr 2021 11:13:48,394 INFO : Expanding LINCS_GCP_Plate94_annotated_minimized.skyd
18 Apr 2021 11:13:48,920 INFO : Expanding LINCS_GCP_Plate94_annotated_minimized.sky.view
18 Apr 2021 11:13:48,940 INFO : Expanding LINCS_GCP_Plate94_annotated_minimized.sky
18 Apr 2021 11:13:49,332 INFO : 1% Done
18 Apr 2021 11:13:51,256 INFO : Inserting H3K4me0 - BI10003
18 Apr 2021 11:13:51,289 INFO : 2% Done
18 Apr 2021 11:13:51,560 INFO : Inserting H3K4me1 - BI10004
18 Apr 2021 11:13:51,796 INFO : Inserting H3K4me2 - BI10005
18 Apr 2021 11:13:51,833 INFO : 3% Done
18 Apr 2021 11:13:52,241 INFO : Inserting H3K4me3 - BI10006
18 Apr 2021 11:13:52,312 INFO : 5% Done
18 Apr 2021 11:13:52,910 INFO : Inserting H3K4ac1 - BI10007
18 Apr 2021 11:13:52,943 INFO : 6% Done
18 Apr 2021 11:13:53,193 INFO : Inserting H3K9me0K14ac0 - BI10008
18 Apr 2021 11:13:53,460 INFO : Inserting H3K9me1K14ac0 - BI10009
18 Apr 2021 11:13:53,489 INFO : 7% Done
18 Apr 2021 11:13:53,694 INFO : Inserting H3K9me2K14ac0 - BI10010
18 Apr 2021 11:13:53,714 INFO : 8% Done
18 Apr 2021 11:13:53,904 INFO : Inserting H3K9me3K14ac0 - BI10011
18 Apr 2021 11:13:53,943 INFO : 9% Done
18 Apr 2021 11:13:54,281 INFO : Inserting H3K9ac1K14ac0 - BI10012
18 Apr 2021 11:13:54,301 INFO : 10% Done
18 Apr 2021 11:13:54,499 INFO : Inserting H3K9me0K14ac1 - BI10013
18 Apr 2021 11:13:54,702 INFO : Inserting H3K9me1K14ac1 - BI10014
18 Apr 2021 11:13:54,721 INFO : 11% Done
18 Apr 2021 11:13:54,906 INFO : Inserting H3K9me2K14ac1 - BI10015
18 Apr 2021 11:13:54,926 INFO : 12% Done
18 Apr 2021 11:13:55,153 INFO : Inserting H3K9me3K14ac1 - BI10016
18 Apr 2021 11:13:55,178 INFO : 13% Done
18 Apr 2021 11:13:55,376 INFO : Inserting H3K9ac1K14ac1 - BI10017
18 Apr 2021 11:13:55,397 INFO : 14% Done
18 Apr 2021 11:13:55,632 INFO : Inserting H3K9me0S10ph1K14ac0 - BI10018
18 Apr 2021 11:13:55,868 INFO : Inserting H3K9me1S10ph1K14ac0 - BI10019
18 Apr 2021 11:13:55,888 INFO : 15% Done
18 Apr 2021 11:13:56,063 INFO : Inserting H3K9me2S10ph1K14ac0 - BI10020
18 Apr 2021 11:13:56,086 INFO : 16% Done
18 Apr 2021 11:13:56,299 INFO : Inserting H3K9me3S10ph1K14ac0 - BI10021
18 Apr 2021 11:13:56,361 INFO : 17% Done
18 Apr 2021 11:13:56,670 INFO : Inserting H3K9ac1S10ph1K14ac0 - BI10022
18 Apr 2021 11:13:56,692 INFO : 18% Done
18 Apr 2021 11:13:56,898 INFO : Inserting H3K9me0S10ph1K14ac1 - BI10023
18 Apr 2021 11:13:57,071 INFO : Inserting H3K9me1S10ph1K14ac1 - BI10024
18 Apr 2021 11:13:57,089 INFO : 19% Done
18 Apr 2021 11:13:57,293 INFO : Inserting H3K9me2S10ph1K14ac1 - BI10025
18 Apr 2021 11:13:57,334 INFO : 20% Done
18 Apr 2021 11:13:57,644 INFO : Inserting H3K9me3S10ph1K14ac1 - BI10026
18 Apr 2021 11:13:57,666 INFO : 21% Done
18 Apr 2021 11:13:57,861 INFO : Inserting H3K9ac1S10ph1K14ac1 - BI10027
18 Apr 2021 11:13:57,883 INFO : 22% Done
18 Apr 2021 11:13:58,052 INFO : Inserting H3K18ac0K23ac0 - BI10028
18 Apr 2021 11:13:58,272 INFO : Inserting H3K18ac1K23ac0 - BI10029
18 Apr 2021 11:13:58,553 INFO : Inserting H3K18ac0K23ac1 - BI10030
18 Apr 2021 11:13:58,571 INFO : 23% Done
18 Apr 2021 11:13:58,802 INFO : Inserting H3K18ac1K23ac1 - BI10031
18 Apr 2021 11:13:58,818 INFO : 24% Done
18 Apr 2021 11:13:58,996 INFO : Inserting H3K18ub1K23ac0 - BI10032
18 Apr 2021 11:13:59,020 INFO : 25% Done
18 Apr 2021 11:13:59,291 INFO : Inserting H3K18ac0K23ub1 - BI10033
18 Apr 2021 11:13:59,308 INFO : 26% Done
18 Apr 2021 11:13:59,449 INFO : Inserting H3K27me0K36me0 - BI10034
18 Apr 2021 11:13:59,793 INFO : Inserting H3K27me0K36me1 - BI10085
18 Apr 2021 11:13:59,827 INFO : 27% Done
18 Apr 2021 11:14:00,175 INFO : Inserting H3K27me0K36me2 - BI10086
18 Apr 2021 11:14:00,194 INFO : 28% Done
18 Apr 2021 11:14:00,502 INFO : Inserting H3K27me0K36me3 - BI10087
18 Apr 2021 11:14:00,518 INFO : 29% Done
18 Apr 2021 11:14:00,749 INFO : Inserting H3K27me1K36me0 - BI10035
18 Apr 2021 11:14:00,790 INFO : 30% Done
18 Apr 2021 11:14:01,161 INFO : Inserting H3K27me1K36me1 - BI10036
18 Apr 2021 11:14:01,179 INFO : 31% Done
18 Apr 2021 11:14:01,392 INFO : Inserting H3K27me1K36me2 - BI10037
18 Apr 2021 11:14:01,547 INFO : Inserting H3K27me1K36me3 - BI10038
18 Apr 2021 11:14:01,562 INFO : 32% Done
18 Apr 2021 11:14:01,720 INFO : Inserting H3K27me2K36me0 - BI10039
18 Apr 2021 11:14:01,738 INFO : 33% Done
18 Apr 2021 11:14:01,910 INFO : Inserting H3K27me2K36me1 - BI10040
18 Apr 2021 11:14:01,944 INFO : 34% Done
18 Apr 2021 11:14:02,227 INFO : Inserting H3K27me2K36me2 - BI10041
18 Apr 2021 11:14:02,638 INFO : Inserting H3K27me2K36me3 - BI10042
18 Apr 2021 11:14:02,724 INFO : 36% Done
18 Apr 2021 11:14:03,140 INFO : Inserting H3K27me3K36me0 - BI10043
18 Apr 2021 11:14:03,169 INFO : 37% Done
18 Apr 2021 11:14:03,339 INFO : Inserting H3K27me3K36me1 - BI10044
18 Apr 2021 11:14:03,368 INFO : 38% Done
18 Apr 2021 11:14:03,576 INFO : Inserting H3K27me3K36me2 - BI10045
18 Apr 2021 11:14:03,781 INFO : Inserting H3K27me3K36me3 - BI10046
18 Apr 2021 11:14:03,880 INFO : 40% Done
18 Apr 2021 11:14:04,271 INFO : Inserting H3K27ac1K36me0 - BI10047
18 Apr 2021 11:14:04,291 INFO : 41% Done
18 Apr 2021 11:14:04,515 INFO : Inserting H3K27ac1K36me1 - BI10048
18 Apr 2021 11:14:04,536 INFO : 42% Done
18 Apr 2021 11:14:04,734 INFO : Inserting H3K27ac1K36me2 - BI10049
18 Apr 2021 11:14:04,986 INFO : Inserting H3K27ac1K36me3 - BI10050
18 Apr 2021 11:14:05,008 INFO : 43% Done
18 Apr 2021 11:14:05,238 INFO : Inserting H3.3K27me0K36me0 - BI10051
18 Apr 2021 11:14:05,253 INFO : 44% Done
18 Apr 2021 11:14:05,449 INFO : Inserting H3NORM(41-49) - BI10052
18 Apr 2021 11:14:05,506 INFO : 45% Done
18 Apr 2021 11:14:05,875 INFO : Inserting H3NORM(41-49) - BI10052p
18 Apr 2021 11:14:05,909 INFO : 46% Done
18 Apr 2021 11:14:06,134 INFO : Inserting H3K56me0 - BI10054
18 Apr 2021 11:14:06,436 INFO : Inserting H3K56me1 - BI10055
18 Apr 2021 11:14:06,458 INFO : 47% Done
18 Apr 2021 11:14:06,779 INFO : Inserting H3K56me2 - BI10056
18 Apr 2021 11:14:06,799 INFO : 48% Done
18 Apr 2021 11:14:07,004 INFO : Inserting H3K56ac1-BI10058
18 Apr 2021 11:14:07,083 INFO : 50% Done
18 Apr 2021 11:14:07,647 INFO : Inserting H3K79me0 - BI10060
18 Apr 2021 11:14:07,890 INFO : Inserting H3K79me1 - BI10061
18 Apr 2021 11:14:07,915 INFO : 51% Done
18 Apr 2021 11:14:08,307 INFO : Inserting H3K79me2 - BI10062
18 Apr 2021 11:14:08,330 INFO : 52% Done
18 Apr 2021 11:14:08,621 INFO : Inserting H4(4to17)ac0me0 - BI10088
18 Apr 2021 11:14:08,728 INFO : 54% Done
18 Apr 2021 11:14:09,207 INFO : Inserting H4(4to17)K5ac1me0_leftpeak - BI10089
18 Apr 2021 11:14:09,280 INFO : 55% Done
18 Apr 2021 11:14:09,603 INFO : Inserting H4(4to17)K12ac1_left peak - BI10091
18 Apr 2021 11:14:09,662 INFO : 57% Done
18 Apr 2021 11:14:10,105 INFO : Inserting H4(4to17)K16ac1me0 - BI10092
18 Apr 2021 11:14:10,127 INFO : 58% Done
18 Apr 2021 11:14:10,349 INFO : Inserting H4(4to17)K16ac0me1 - BI10102
18 Apr 2021 11:14:10,478 INFO : 60% Done
18 Apr 2021 11:14:11,179 INFO : Inserting H4(4to17)K5ac1K8ac1me0_left peak - BI10094
18 Apr 2021 11:14:11,214 INFO : 61% Done
18 Apr 2021 11:14:11,522 INFO : Inserting H4(4to17)K5ac1K16ac1me0_right peak - BI10095
18 Apr 2021 11:14:11,549 INFO : 62% Done
18 Apr 2021 11:14:11,822 INFO : Inserting H4(4to17)K8ac1K12ac1me0_left peak - BI10093
18 Apr 2021 11:14:11,860 INFO : 63% Done
18 Apr 2021 11:14:12,180 INFO : Inserting H4(4to17)K12ac1K16ac1me0 - BI10097
18 Apr 2021 11:14:12,270 INFO : 64% Done
18 Apr 2021 11:14:12,700 INFO : Inserting H4(4to17)K8ac1K12ac1K16ac1me0_right peak - BI10098
18 Apr 2021 11:14:12,735 INFO : 66% Done
18 Apr 2021 11:14:13,053 INFO : Inserting H4(4to17)K5ac1K8ac1K12ac1me0_left peak - BI10099
18 Apr 2021 11:14:13,265 INFO : 68% Done
18 Apr 2021 11:14:13,904 INFO : Inserting H4(4to17)K5ac1K8ac1K16ac1me0_right peak - BI10100
18 Apr 2021 11:14:13,935 INFO : 69% Done
18 Apr 2021 11:14:14,231 INFO : Inserting H4(4to17)K5ac1K8ac1K12ac1K16ac1me0 - BI10101
18 Apr 2021 11:14:14,397 INFO : 71% Done
18 Apr 2021 11:14:14,972 INFO : Inserting H4(68-78)AltNorm - BI10108
18 Apr 2021 11:14:15,097 INFO : 73% Done
18 Apr 2021 11:14:15,661 INFO : Inserting H4(68-78)AltNorm - BI10108p
18 Apr 2021 11:14:15,701 INFO : 74% Done
18 Apr 2021 11:14:15,895 INFO : Inserting H4(20to23)K20me0 - BI10103
18 Apr 2021 11:14:15,967 INFO : 75% Done
18 Apr 2021 11:14:16,241 INFO : Inserting H4(20to23)K20me1 - BI10104
18 Apr 2021 11:14:16,265 INFO : 76% Done
18 Apr 2021 11:14:16,495 INFO : Inserting H4(20to23)K20me2 - BI10105
18 Apr 2021 11:14:16,540 INFO : 77% Done
18 Apr 2021 11:14:16,862 INFO : Inserting H4(20to23)K20me3 - BI10106
18 Apr 2021 11:14:16,887 INFO : 78% Done
18 Apr 2021 11:14:17,150 INFO : Inserting H2A(21to29)NORM - BI10109
18 Apr 2021 11:14:17,266 INFO : 80% Done
18 Apr 2021 11:14:17,720 INFO : Done parsing Skyline document.
18 Apr 2021 11:14:17,744 INFO : No group comparisons found.
18 Apr 2021 11:14:17,744 INFO : Calculating calibration curves
18 Apr 2021 11:14:17,978 INFO : 81% Done
18 Apr 2021 11:14:18,225 INFO : 82% Done
18 Apr 2021 11:14:18,416 INFO : 83% Done
18 Apr 2021 11:14:18,657 INFO : 84% Done
18 Apr 2021 11:14:18,914 INFO : 85% Done
18 Apr 2021 11:14:19,120 INFO : 86% Done
18 Apr 2021 11:14:19,303 INFO : 87% Done
18 Apr 2021 11:14:19,528 INFO : 88% Done
18 Apr 2021 11:14:19,787 INFO : 89% Done
18 Apr 2021 11:14:20,042 INFO : 90% Done
18 Apr 2021 11:14:20,317 INFO : 91% Done
18 Apr 2021 11:14:20,505 INFO : 92% Done
18 Apr 2021 11:14:20,716 INFO : 93% Done
18 Apr 2021 11:14:20,959 INFO : 94% Done
18 Apr 2021 11:14:21,421 INFO : 95% Done
18 Apr 2021 11:14:21,796 INFO : 96% Done
18 Apr 2021 11:14:22,318 INFO : 97% Done
18 Apr 2021 11:14:22,540 INFO : 98% Done
18 Apr 2021 11:14:22,765 INFO : Done calculating calibration curves.
18 Apr 2021 11:14:22,767 INFO : Creating and populating temp tables for Proportion values
18 Apr 2021 11:14:22,889 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
18 Apr 2021 11:14:23,532 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
18 Apr 2021 11:14:23,787 INFO : Cleaning up temp tables
18 Apr 2021 11:14:24,131 INFO : Completed import of Skyline document from LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23.sky.zip
18 Apr 2021 11:14:24,136 INFO : 100% Done
18 Apr 2021 11:14:24,321 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'