Copying experiment: Development of a Mass Spectrometry-Based Method for Quantification of Total Cashew Protein in Roasting Oil

Nebraska U FARRP - Cashew Targeted Method

Job Status

Created: 2023-12-20 00:32:22
Modified: 2023-12-20 00:37:35
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Copying experiment: Development of a Mass Spectrometry-Based Method for Quantification of Total Cashew Protein in Roasting Oil
File Path: /data/labkey/files/Panorama Public/2023/Nebraska U FARRP - Cashew Targeted Method/@files/Experiment_1828.log
Files: Experiment_1828.log
Completed Runs: 20191112_Diff-TempConc_Oil-Spike_24pep_2022-05-25_14-24-35.sky.zip
20210607 Calibration Curve_DilutionDigest_2023-12-11_10-50-40.sky.zip
20210301 Calibration Dev_DilutionOil_2023-12-11_10-57-35.sky.zip
20190904_Organic_Aqueous_Extraction_Oil_Spike_24pep_2022-05-25_14-12-26.sky.zip
20191007_HeatedOilSpike_Extraction_method_24pep_2022-05-25_14-16-21.sky.zip
20200622_PeptideSpecificityTest_2022-05-25_16-30-20.sky.zip
20200715_PeptideSpecificity_SignalRatio_2022-05-25_16-33-02.sky.zip
HeatedOilSpike-LowTemp_HighTemp_Combined_Final_2022-05-26_12-00-47.sky.zip
20210212 Low range exploration 140K-fragmod_Pub_2023-12-08_16-04-13.sky.zip

Log File


20 Dec 2023 00:32:22,129 INFO : Copying experiment "Development of a Mass Spectrometry-Based Method for Quantification of Total Cashew Protein in Roasting Oil" from folder /Nebraska U - FARRP/Cashew Targeted Method to /Panorama Public/2023/Nebraska U FARRP - Cashew Targeted Method
20 Dec 2023 00:32:22,129 INFO : =======================================
20 Dec 2023 00:32:22,168 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
20 Dec 2023 00:32:22,168 INFO :
20 Dec 2023 00:32:22,168 INFO : Exporting experiment.
20 Dec 2023 00:33:54,853 INFO : Exporting files metadata.
20 Dec 2023 00:33:55,197 INFO :
20 Dec 2023 00:33:55,197 INFO : Experiment export completed successfully.
20 Dec 2023 00:33:55,197 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
20 Dec 2023 00:33:55,221 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
20 Dec 2023 00:33:55,221 INFO :
20 Dec 2023 00:33:55,221 INFO : Importing experiment.
20 Dec 2023 00:33:55,224 INFO : Loading folder properties (folder type, settings and active modules)
20 Dec 2023 00:33:55,312 INFO : Done importing folder properties (folder type, settings and active modules)
20 Dec 2023 00:33:55,313 INFO : Loading container specific module properties
20 Dec 2023 00:33:55,317 INFO : Done importing container specific module properties
20 Dec 2023 00:33:55,318 INFO : Loading etl definitions
20 Dec 2023 00:33:55,319 INFO : Loading wikis
20 Dec 2023 00:33:55,320 INFO : 0 wikis imported
20 Dec 2023 00:33:55,320 INFO : Done importing wikis
20 Dec 2023 00:33:55,322 INFO : Starting Data Class Importer
20 Dec 2023 00:33:55,322 INFO : No types XAR file to process.
20 Dec 2023 00:33:55,322 INFO : Finished Data Class Importer
20 Dec 2023 00:33:55,322 INFO : Starting to copy files
20 Dec 2023 00:33:55,322 INFO : Copied 0 files
20 Dec 2023 00:33:55,322 INFO : Ensuring exp.data rows exist for imported files
20 Dec 2023 00:33:55,378 INFO : Starting Sample Type Importer
20 Dec 2023 00:33:55,379 INFO : No types XAR file to process.
20 Dec 2023 00:33:55,379 INFO : Finished Sample Type Importer
20 Dec 2023 00:33:55,379 INFO : Loading xar
20 Dec 2023 00:34:26,541 INFO : Starting import from 20190904_Organic_Aqueous_Extraction_Oil_Spike_24pep_2022-05-25_14-12-26.sky.zip
20 Dec 2023 00:34:26,544 INFO : Starting to import Skyline document from 20190904_Organic_Aqueous_Extraction_Oil_Spike_24pep_2022-05-25_14-12-26.sky.zip
20 Dec 2023 00:34:26,547 INFO : Expanding 20190904_Organic_Aqueous_Extraction_Oil_Spike_24pep.blib
20 Dec 2023 00:34:27,651 INFO : Expanding 20190904_Organic_Aqueous_Extraction_Oil_Spike_24pep.redundant.blib
20 Dec 2023 00:34:31,038 INFO : Expanding 20190904_Organic_Aqueous_Extraction_Oil_Spike_24pep.skyd
20 Dec 2023 00:34:31,442 INFO : Expanding 20190904_Organic_Aqueous_Extraction_Oil_Spike_24pep.sky.view
20 Dec 2023 00:34:31,443 INFO : Expanding 20190904_Organic_Aqueous_Extraction_Oil_Spike_24pep.sky
20 Dec 2023 00:34:31,453 INFO : Expanding 20190904_Organic_Aqueous_Extraction_Oil_Spike_24pep.skyl
20 Dec 2023 00:34:31,770 INFO : 2% Done
20 Dec 2023 00:34:32,137 INFO : Inserting Q8H2B8_ANAOC
20 Dec 2023 00:34:32,147 INFO : 3% Done
20 Dec 2023 00:34:32,192 INFO : 6% Done
20 Dec 2023 00:34:32,224 INFO : Inserting Q8GZP6_ANAOC
20 Dec 2023 00:34:32,236 INFO : 10% Done
20 Dec 2023 00:34:32,275 INFO : 12% Done
20 Dec 2023 00:34:32,315 INFO : 15% Done
20 Dec 2023 00:34:32,347 INFO : Inserting Q8L5L6_ANAOC
20 Dec 2023 00:34:32,359 INFO : 18% Done
20 Dec 2023 00:34:32,397 INFO : 21% Done
20 Dec 2023 00:34:32,440 INFO : 24% Done
20 Dec 2023 00:34:32,471 INFO : Inserting Anaoc.0001s2421.1.p
20 Dec 2023 00:34:32,483 INFO : 27% Done
20 Dec 2023 00:34:32,515 INFO : Inserting Anaoc.0020s0683.1.p
20 Dec 2023 00:34:32,535 INFO : 33% Done
20 Dec 2023 00:34:32,593 INFO : Inserting Anaoc.0008s0618.1.p
20 Dec 2023 00:34:32,604 INFO : 36% Done
20 Dec 2023 00:34:32,644 INFO : 39% Done
20 Dec 2023 00:34:32,692 INFO : 45% Done
20 Dec 2023 00:34:32,758 INFO : 48% Done
20 Dec 2023 00:34:32,799 INFO : 51% Done
20 Dec 2023 00:34:32,843 INFO : 54% Done
20 Dec 2023 00:34:32,878 INFO : Inserting Anaoc.0008s0624.1.p
20 Dec 2023 00:34:32,888 INFO : 57% Done
20 Dec 2023 00:34:32,930 INFO : 60% Done
20 Dec 2023 00:34:32,964 INFO : Inserting Anaoc.0603s0005.1.p
20 Dec 2023 00:34:32,977 INFO : 62% Done
20 Dec 2023 00:34:33,009 INFO : Inserting Anaoc.0018s0441.1.p
20 Dec 2023 00:34:33,023 INFO : 66% Done
20 Dec 2023 00:34:33,058 INFO : Inserting Anaoc.0013s0411.1.p
20 Dec 2023 00:34:33,070 INFO : 69% Done
20 Dec 2023 00:34:33,122 INFO : 74% Done
20 Dec 2023 00:34:33,181 INFO : Inserting Anaoc.0004s1797.1.p
20 Dec 2023 00:34:33,194 INFO : 77% Done
20 Dec 2023 00:34:33,246 INFO : 80% Done
20 Dec 2023 00:34:33,283 INFO : Done parsing Skyline document.
20 Dec 2023 00:34:33,371 INFO : Calculating fold changes
20 Dec 2023 00:34:33,735 INFO : 89% Done
20 Dec 2023 00:34:33,735 INFO : Done calculating fold changes.
20 Dec 2023 00:34:33,735 INFO : Calculating calibration curves
20 Dec 2023 00:34:33,761 INFO : 90% Done
20 Dec 2023 00:34:33,803 INFO : 91% Done
20 Dec 2023 00:34:33,864 INFO : 92% Done
20 Dec 2023 00:34:33,898 INFO : 93% Done
20 Dec 2023 00:34:34,007 INFO : 94% Done
20 Dec 2023 00:34:34,040 INFO : 95% Done
20 Dec 2023 00:34:34,059 INFO : 96% Done
20 Dec 2023 00:34:34,123 INFO : 97% Done
20 Dec 2023 00:34:34,158 INFO : 98% Done
20 Dec 2023 00:34:34,165 INFO : Done calculating calibration curves.
20 Dec 2023 00:35:01,182 INFO : Creating and populating temp tables for Proportion values
20 Dec 2023 00:35:01,349 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
20 Dec 2023 00:35:01,387 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
20 Dec 2023 00:35:01,412 INFO : Cleaning up temp tables
20 Dec 2023 00:35:01,883 INFO : Completed import of Skyline document from 20190904_Organic_Aqueous_Extraction_Oil_Spike_24pep_2022-05-25_14-12-26.sky.zip
20 Dec 2023 00:35:01,885 INFO : 100% Done
20 Dec 2023 00:35:01,892 INFO : Starting import from 20191007_HeatedOilSpike_Extraction_method_24pep_2022-05-25_14-16-21.sky.zip
20 Dec 2023 00:35:01,893 INFO : Starting to import Skyline document from 20191007_HeatedOilSpike_Extraction_method_24pep_2022-05-25_14-16-21.sky.zip
20 Dec 2023 00:35:02,397 INFO : Expanding 20191007_HeatedOilSpike_Extraction_method_24pep.blib
20 Dec 2023 00:35:03,050 INFO : Expanding 20191007_HeatedOilSpike_Extraction_method_24pep.redundant.blib
20 Dec 2023 00:35:05,843 INFO : Expanding 20191007_HeatedOilSpike_Extraction_method_24pep.skyd
20 Dec 2023 00:35:06,084 INFO : Expanding 20191007_HeatedOilSpike_Extraction_method_24pep.sky.view
20 Dec 2023 00:35:06,085 INFO : Expanding 20191007_HeatedOilSpike_Extraction_method_24pep.sky
20 Dec 2023 00:35:06,152 INFO : Expanding 20191007_HeatedOilSpike_Extraction_method_24pep.skyl
20 Dec 2023 00:35:06,158 INFO : 2% Done
20 Dec 2023 00:35:06,544 INFO : Inserting Q8H2B8_ANAOC
20 Dec 2023 00:35:06,551 INFO : 3% Done
20 Dec 2023 00:35:06,584 INFO : 6% Done
20 Dec 2023 00:35:06,615 INFO : Inserting Q8GZP6_ANAOC
20 Dec 2023 00:35:06,625 INFO : 10% Done
20 Dec 2023 00:35:06,663 INFO : 13% Done
20 Dec 2023 00:35:06,701 INFO : 16% Done
20 Dec 2023 00:35:06,735 INFO : Inserting Q8L5L6_ANAOC
20 Dec 2023 00:35:06,745 INFO : 18% Done
20 Dec 2023 00:35:06,777 INFO : 22% Done
20 Dec 2023 00:35:06,814 INFO : 24% Done
20 Dec 2023 00:35:06,845 INFO : 25% Done
20 Dec 2023 00:35:06,845 INFO : Inserting Anaoc.0001s2421.1.p
20 Dec 2023 00:35:06,854 INFO : 27% Done
20 Dec 2023 00:35:06,883 INFO : Inserting Anaoc.0020s0683.1.p
20 Dec 2023 00:35:06,904 INFO : 34% Done
20 Dec 2023 00:35:06,959 INFO : Inserting Anaoc.0008s0618.1.p
20 Dec 2023 00:35:06,969 INFO : 37% Done
20 Dec 2023 00:35:07,010 INFO : 40% Done
20 Dec 2023 00:35:07,061 INFO : 46% Done
20 Dec 2023 00:35:07,124 INFO : 49% Done
20 Dec 2023 00:35:07,163 INFO : 52% Done
20 Dec 2023 00:35:07,205 INFO : 55% Done
20 Dec 2023 00:35:07,237 INFO : Inserting Anaoc.0008s0624.1.p
20 Dec 2023 00:35:07,246 INFO : 58% Done
20 Dec 2023 00:35:07,283 INFO : 61% Done
20 Dec 2023 00:35:07,314 INFO : Inserting Anaoc.0603s0005.1.p
20 Dec 2023 00:35:07,325 INFO : 64% Done
20 Dec 2023 00:35:07,355 INFO : Inserting Anaoc.0018s0441.1.p
20 Dec 2023 00:35:07,365 INFO : 67% Done
20 Dec 2023 00:35:07,396 INFO : Inserting Anaoc.0013s0411.1.p
20 Dec 2023 00:35:07,405 INFO : 70% Done
20 Dec 2023 00:35:07,454 INFO : 74% Done
20 Dec 2023 00:35:07,506 INFO : Inserting Anaoc.0004s1797.1.p
20 Dec 2023 00:35:07,516 INFO : 77% Done
20 Dec 2023 00:35:07,559 INFO : 80% Done
20 Dec 2023 00:35:07,592 INFO : Done parsing Skyline document.
20 Dec 2023 00:35:07,657 INFO : Calculating fold changes
20 Dec 2023 00:35:07,972 INFO : 85% Done
20 Dec 2023 00:35:08,303 INFO : 89% Done
20 Dec 2023 00:35:08,303 INFO : Done calculating fold changes.
20 Dec 2023 00:35:08,303 INFO : Calculating calibration curves
20 Dec 2023 00:35:08,325 INFO : 90% Done
20 Dec 2023 00:35:08,361 INFO : 91% Done
20 Dec 2023 00:35:08,409 INFO : 92% Done
20 Dec 2023 00:35:08,432 INFO : 93% Done
20 Dec 2023 00:35:08,513 INFO : 94% Done
20 Dec 2023 00:35:08,538 INFO : 95% Done
20 Dec 2023 00:35:08,556 INFO : 96% Done
20 Dec 2023 00:35:08,599 INFO : 97% Done
20 Dec 2023 00:35:08,623 INFO : 98% Done
20 Dec 2023 00:35:08,627 INFO : Done calculating calibration curves.
20 Dec 2023 00:35:08,640 INFO : Creating and populating temp tables for Proportion values
20 Dec 2023 00:35:08,773 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
20 Dec 2023 00:35:08,805 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
20 Dec 2023 00:35:08,826 INFO : Cleaning up temp tables
20 Dec 2023 00:35:09,241 INFO : Completed import of Skyline document from 20191007_HeatedOilSpike_Extraction_method_24pep_2022-05-25_14-16-21.sky.zip
20 Dec 2023 00:35:09,243 INFO : 100% Done
20 Dec 2023 00:35:09,248 INFO : Starting import from 20191112_Diff-TempConc_Oil-Spike_24pep_2022-05-25_14-24-35.sky.zip
20 Dec 2023 00:35:09,250 INFO : Starting to import Skyline document from 20191112_Diff-TempConc_Oil-Spike_24pep_2022-05-25_14-24-35.sky.zip
20 Dec 2023 00:35:09,367 INFO : Expanding 20191112_Diff-TempConc_Oil-Spike_24pep.blib
20 Dec 2023 00:35:09,972 INFO : Expanding 20191112_Diff-TempConc_Oil-Spike_24pep.redundant.blib
20 Dec 2023 00:35:13,029 INFO : Expanding 20191112_Diff-TempConc_Oil-Spike_24pep.skyd
20 Dec 2023 00:35:13,277 INFO : Expanding 20191112_Diff-TempConc_Oil-Spike_24pep.sky.view
20 Dec 2023 00:35:13,334 INFO : Expanding 20191112_Diff-TempConc_Oil-Spike_24pep.sky
20 Dec 2023 00:35:13,342 INFO : Expanding 20191112_Diff-TempConc_Oil-Spike_24pep.skyl
20 Dec 2023 00:35:13,553 INFO : 2% Done
20 Dec 2023 00:35:14,006 INFO : Inserting Q8H2B8_ANAOC
20 Dec 2023 00:35:14,014 INFO : 3% Done
20 Dec 2023 00:35:14,069 INFO : 6% Done
20 Dec 2023 00:35:14,108 INFO : Inserting Q8GZP6_ANAOC
20 Dec 2023 00:35:14,120 INFO : 10% Done
20 Dec 2023 00:35:14,179 INFO : 13% Done
20 Dec 2023 00:35:14,249 INFO : 16% Done
20 Dec 2023 00:35:14,286 INFO : Inserting Q8L5L6_ANAOC
20 Dec 2023 00:35:14,297 INFO : 19% Done
20 Dec 2023 00:35:14,340 INFO : 22% Done
20 Dec 2023 00:35:14,393 INFO : 24% Done
20 Dec 2023 00:35:14,436 INFO : 25% Done
20 Dec 2023 00:35:14,436 INFO : Inserting Anaoc.0001s2421.1.p
20 Dec 2023 00:35:14,448 INFO : 27% Done
20 Dec 2023 00:35:14,494 INFO : Inserting Anaoc.0020s0683.1.p
20 Dec 2023 00:35:14,514 INFO : 34% Done
20 Dec 2023 00:35:14,590 INFO : Inserting Anaoc.0008s0618.1.p
20 Dec 2023 00:35:14,601 INFO : 37% Done
20 Dec 2023 00:35:14,646 INFO : 40% Done
20 Dec 2023 00:35:14,707 INFO : 46% Done
20 Dec 2023 00:35:14,795 INFO : 50% Done
20 Dec 2023 00:35:14,845 INFO : 53% Done
20 Dec 2023 00:35:14,894 INFO : 55% Done
20 Dec 2023 00:35:14,941 INFO : Inserting Anaoc.0008s0624.1.p
20 Dec 2023 00:35:14,950 INFO : 58% Done
20 Dec 2023 00:35:14,997 INFO : 62% Done
20 Dec 2023 00:35:15,038 INFO : Inserting Anaoc.0603s0005.1.p
20 Dec 2023 00:35:15,049 INFO : 65% Done
20 Dec 2023 00:35:15,090 INFO : Inserting Anaoc.0018s0441.1.p
20 Dec 2023 00:35:15,099 INFO : 67% Done
20 Dec 2023 00:35:15,145 INFO : Inserting Anaoc.0013s0411.1.p
20 Dec 2023 00:35:15,153 INFO : 69% Done
20 Dec 2023 00:35:15,211 INFO : 74% Done
20 Dec 2023 00:35:15,277 INFO : Inserting Anaoc.0004s1797.1.p
20 Dec 2023 00:35:15,287 INFO : 77% Done
20 Dec 2023 00:35:15,335 INFO : 80% Done
20 Dec 2023 00:35:15,378 INFO : Done parsing Skyline document.
20 Dec 2023 00:35:15,439 INFO : Calculating fold changes
20 Dec 2023 00:35:15,790 INFO : 89% Done
20 Dec 2023 00:35:15,791 INFO : Done calculating fold changes.
20 Dec 2023 00:35:15,791 INFO : Calculating calibration curves
20 Dec 2023 00:35:15,818 INFO : 90% Done
20 Dec 2023 00:35:15,866 INFO : 91% Done
20 Dec 2023 00:35:15,917 INFO : 92% Done
20 Dec 2023 00:35:15,943 INFO : 93% Done
20 Dec 2023 00:35:16,036 INFO : 94% Done
20 Dec 2023 00:35:16,065 INFO : 95% Done
20 Dec 2023 00:35:16,079 INFO : 96% Done
20 Dec 2023 00:35:16,124 INFO : 97% Done
20 Dec 2023 00:35:16,154 INFO : 98% Done
20 Dec 2023 00:35:16,158 INFO : Done calculating calibration curves.
20 Dec 2023 00:35:43,501 INFO : Creating and populating temp tables for Proportion values
20 Dec 2023 00:35:43,646 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
20 Dec 2023 00:35:43,687 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
20 Dec 2023 00:35:43,712 INFO : Cleaning up temp tables
20 Dec 2023 00:35:44,132 INFO : Completed import of Skyline document from 20191112_Diff-TempConc_Oil-Spike_24pep_2022-05-25_14-24-35.sky.zip
20 Dec 2023 00:35:44,134 INFO : 100% Done
20 Dec 2023 00:35:44,139 INFO : Starting import from 20200622_PeptideSpecificityTest_2022-05-25_16-30-20.sky.zip
20 Dec 2023 00:35:44,140 INFO : Starting to import Skyline document from 20200622_PeptideSpecificityTest_2022-05-25_16-30-20.sky.zip
20 Dec 2023 00:35:44,233 INFO : Expanding 20190514_Oil-roasted-cashew.blib
20 Dec 2023 00:35:44,933 INFO : Expanding 20190514_Oil-roasted-cashew.redundant.blib
20 Dec 2023 00:35:47,883 INFO : Expanding 20200622_PeptideSpecificityTest.skyd
20 Dec 2023 00:35:48,283 INFO : Expanding 20200622_PeptideSpecificityTest.sky.view
20 Dec 2023 00:35:48,336 INFO : Expanding 20200622_PeptideSpecificityTest.sky
20 Dec 2023 00:35:48,604 INFO : Expanding 20200622_PeptideSpecificityTest.skyl
20 Dec 2023 00:35:48,614 INFO : 2% Done
20 Dec 2023 00:35:49,113 INFO : Inserting Q8H2B8_ANAOC
20 Dec 2023 00:35:49,123 INFO : 3% Done
20 Dec 2023 00:35:49,180 INFO : 7% Done
20 Dec 2023 00:35:49,247 INFO : Inserting Q8GZP6_ANAOC
20 Dec 2023 00:35:49,261 INFO : 10% Done
20 Dec 2023 00:35:49,353 INFO : 14% Done
20 Dec 2023 00:35:49,416 INFO : 17% Done
20 Dec 2023 00:35:49,471 INFO : Inserting Q8L5L6_ANAOC
20 Dec 2023 00:35:49,483 INFO : 20% Done
20 Dec 2023 00:35:49,537 INFO : 23% Done
20 Dec 2023 00:35:49,596 INFO : 26% Done
20 Dec 2023 00:35:49,647 INFO : Inserting Anaoc.0001s2421.1.p
20 Dec 2023 00:35:49,662 INFO : 30% Done
20 Dec 2023 00:35:49,722 INFO : Inserting Anaoc.0020s0683.1.p
20 Dec 2023 00:35:49,750 INFO : 36% Done
20 Dec 2023 00:35:49,848 INFO : Inserting Anaoc.0008s0618.1.p
20 Dec 2023 00:35:49,861 INFO : 40% Done
20 Dec 2023 00:35:49,925 INFO : 43% Done
20 Dec 2023 00:35:49,990 INFO : 46% Done
20 Dec 2023 00:35:50,040 INFO : Inserting Anaoc.0008s0624.1.p
20 Dec 2023 00:35:50,051 INFO : 50% Done
20 Dec 2023 00:35:50,089 INFO : Inserting Anaoc.0603s0005.1.p
20 Dec 2023 00:35:50,102 INFO : 53% Done
20 Dec 2023 00:35:50,151 INFO : Inserting Anaoc.0018s0441.1.p
20 Dec 2023 00:35:50,162 INFO : 55% Done
20 Dec 2023 00:35:50,205 INFO : 56% Done
20 Dec 2023 00:35:50,205 INFO : Inserting Anaoc.0013s0411.1.p
20 Dec 2023 00:35:50,215 INFO : 58% Done
20 Dec 2023 00:35:50,272 INFO : 63% Done
20 Dec 2023 00:35:50,342 INFO : Inserting Anaoc.0004s1797.1.p
20 Dec 2023 00:35:50,353 INFO : 66% Done
20 Dec 2023 00:35:50,408 INFO : 70% Done
20 Dec 2023 00:35:50,455 INFO : Inserting Q8H2B8_ANAOC
20 Dec 2023 00:35:50,463 INFO : 72% Done
20 Dec 2023 00:35:50,493 INFO : Inserting Q8GZP6_ANAOC
20 Dec 2023 00:35:50,501 INFO : 74% Done
20 Dec 2023 00:35:50,541 INFO : 76% Done
20 Dec 2023 00:35:50,570 INFO : Inserting Anaoc.0008s0618.1.p
20 Dec 2023 00:35:50,577 INFO : 78% Done
20 Dec 2023 00:35:50,619 INFO : 80% Done
20 Dec 2023 00:35:50,649 INFO : Done parsing Skyline document.
20 Dec 2023 00:35:50,710 INFO : Calculating fold changes
20 Dec 2023 00:35:51,028 INFO : 89% Done
20 Dec 2023 00:35:51,028 INFO : Done calculating fold changes.
20 Dec 2023 00:35:51,028 INFO : Calculating calibration curves
20 Dec 2023 00:35:51,053 INFO : 90% Done
20 Dec 2023 00:35:51,142 INFO : 91% Done
20 Dec 2023 00:35:51,161 INFO : 92% Done
20 Dec 2023 00:35:51,246 INFO : 93% Done
20 Dec 2023 00:35:51,260 INFO : 94% Done
20 Dec 2023 00:35:51,293 INFO : 95% Done
20 Dec 2023 00:35:51,365 INFO : 96% Done
20 Dec 2023 00:35:51,379 INFO : 97% Done
20 Dec 2023 00:35:51,422 INFO : 98% Done
20 Dec 2023 00:35:51,426 INFO : Done calculating calibration curves.
20 Dec 2023 00:35:51,459 INFO : Creating and populating temp tables for Proportion values
20 Dec 2023 00:35:51,595 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
20 Dec 2023 00:35:51,641 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
20 Dec 2023 00:35:51,670 INFO : Cleaning up temp tables
20 Dec 2023 00:35:52,076 INFO : Completed import of Skyline document from 20200622_PeptideSpecificityTest_2022-05-25_16-30-20.sky.zip
20 Dec 2023 00:35:52,078 INFO : 100% Done
20 Dec 2023 00:35:52,082 INFO : Starting import from 20200715_PeptideSpecificity_SignalRatio_2022-05-25_16-33-02.sky.zip
20 Dec 2023 00:35:52,084 INFO : Starting to import Skyline document from 20200715_PeptideSpecificity_SignalRatio_2022-05-25_16-33-02.sky.zip
20 Dec 2023 00:35:52,167 INFO : Expanding 20190514_Oil-roasted-cashew.blib
20 Dec 2023 00:35:52,832 INFO : Expanding 20190514_Oil-roasted-cashew.redundant.blib
20 Dec 2023 00:35:55,815 INFO : Expanding 20200715_PeptideSpecificity_SignalRatio.skyd
20 Dec 2023 00:35:56,097 INFO : Expanding 20200715_PeptideSpecificity_SignalRatio.sky.view
20 Dec 2023 00:35:56,098 INFO : Expanding 20200715_PeptideSpecificity_SignalRatio.sky
20 Dec 2023 00:35:56,105 INFO : Expanding 20200715_PeptideSpecificity_SignalRatio.skyl
20 Dec 2023 00:35:56,112 INFO : 2% Done
20 Dec 2023 00:35:56,666 INFO : Inserting Q8H2B8_ANAOC
20 Dec 2023 00:35:56,677 INFO : 4% Done
20 Dec 2023 00:35:56,728 INFO : 8% Done
20 Dec 2023 00:35:56,779 INFO : Inserting Q8GZP6_ANAOC
20 Dec 2023 00:35:56,793 INFO : 12% Done
20 Dec 2023 00:35:56,854 INFO : 16% Done
20 Dec 2023 00:35:56,915 INFO : 20% Done
20 Dec 2023 00:35:56,964 INFO : Inserting Q8L5L6_ANAOC
20 Dec 2023 00:35:56,976 INFO : 23% Done
20 Dec 2023 00:35:57,024 INFO : 26% Done
20 Dec 2023 00:35:57,079 INFO : 30% Done
20 Dec 2023 00:35:57,130 INFO : Inserting Anaoc.0001s2421.1.p
20 Dec 2023 00:35:57,144 INFO : 34% Done
20 Dec 2023 00:35:57,192 INFO : Inserting Anaoc.0020s0683.1.p
20 Dec 2023 00:35:57,216 INFO : 42% Done
20 Dec 2023 00:35:57,303 INFO : Inserting Anaoc.0008s0618.1.p
20 Dec 2023 00:35:57,317 INFO : 46% Done
20 Dec 2023 00:35:57,376 INFO : 50% Done
20 Dec 2023 00:35:57,435 INFO : 54% Done
20 Dec 2023 00:35:57,480 INFO : Inserting Anaoc.0008s0624.1.p
20 Dec 2023 00:35:57,491 INFO : 57% Done
20 Dec 2023 00:35:57,530 INFO : Inserting Anaoc.0603s0005.1.p
20 Dec 2023 00:35:57,542 INFO : 61% Done
20 Dec 2023 00:35:57,589 INFO : Inserting Anaoc.0018s0441.1.p
20 Dec 2023 00:35:57,600 INFO : 64% Done
20 Dec 2023 00:35:57,642 INFO : Inserting Anaoc.0013s0411.1.p
20 Dec 2023 00:35:57,652 INFO : 67% Done
20 Dec 2023 00:35:57,711 INFO : 73% Done
20 Dec 2023 00:35:57,784 INFO : Inserting Anaoc.0004s1797.1.p
20 Dec 2023 00:35:57,796 INFO : 76% Done
20 Dec 2023 00:35:57,848 INFO : 80% Done
20 Dec 2023 00:35:57,895 INFO : Done parsing Skyline document.
20 Dec 2023 00:35:57,957 INFO : Calculating fold changes
20 Dec 2023 00:35:58,231 INFO : 89% Done
20 Dec 2023 00:35:58,231 INFO : Done calculating fold changes.
20 Dec 2023 00:35:58,231 INFO : Calculating calibration curves
20 Dec 2023 00:35:58,256 INFO : 90% Done
20 Dec 2023 00:35:58,301 INFO : 91% Done
20 Dec 2023 00:35:58,356 INFO : 92% Done
20 Dec 2023 00:35:58,384 INFO : 93% Done
20 Dec 2023 00:35:58,427 INFO : 94% Done
20 Dec 2023 00:35:58,442 INFO : 95% Done
20 Dec 2023 00:35:58,459 INFO : 96% Done
20 Dec 2023 00:35:58,508 INFO : 97% Done
20 Dec 2023 00:35:58,536 INFO : 98% Done
20 Dec 2023 00:35:58,539 INFO : Done calculating calibration curves.
20 Dec 2023 00:35:58,559 INFO : Creating and populating temp tables for Proportion values
20 Dec 2023 00:35:58,710 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
20 Dec 2023 00:35:58,748 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
20 Dec 2023 00:35:58,772 INFO : Cleaning up temp tables
20 Dec 2023 00:35:59,186 INFO : Completed import of Skyline document from 20200715_PeptideSpecificity_SignalRatio_2022-05-25_16-33-02.sky.zip
20 Dec 2023 00:35:59,188 INFO : 100% Done
20 Dec 2023 00:35:59,193 INFO : Starting import from HeatedOilSpike-LowTemp_HighTemp_Combined_Final_2022-05-26_12-00-47.sky.zip
20 Dec 2023 00:35:59,194 INFO : Starting to import Skyline document from HeatedOilSpike-LowTemp_HighTemp_Combined_Final_2022-05-26_12-00-47.sky.zip
20 Dec 2023 00:35:59,385 INFO : Expanding 20190514_Oil-roasted-cashew.blib
20 Dec 2023 00:36:00,049 INFO : Expanding 20190514_Oil-roasted-cashew.redundant.blib
20 Dec 2023 00:36:02,980 INFO : Expanding HeatedOilSpike-LowTemp_HighTemp_Combined_Final.skyd
20 Dec 2023 00:36:03,388 INFO : Expanding HeatedOilSpike-LowTemp_HighTemp_Combined_Final.sky.view
20 Dec 2023 00:36:03,568 INFO : Expanding HeatedOilSpike-LowTemp_HighTemp_Combined_Final.sky
20 Dec 2023 00:36:03,628 INFO : Expanding HeatedOilSpike-LowTemp_HighTemp_Combined_Final.skyl
20 Dec 2023 00:36:03,698 INFO : 3% Done
20 Dec 2023 00:36:04,605 INFO : Inserting Q8H2B8_ANAOC
20 Dec 2023 00:36:04,649 INFO : 13% Done
20 Dec 2023 00:36:04,987 INFO : 14% Done
20 Dec 2023 00:36:04,987 INFO : Inserting Q8GZP6_ANAOC
20 Dec 2023 00:36:05,030 INFO : 23% Done
20 Dec 2023 00:36:05,368 INFO : 28% Done
20 Dec 2023 00:36:05,515 INFO : 38% Done
20 Dec 2023 00:36:05,842 INFO : Inserting Q8L5L6_ANAOC
20 Dec 2023 00:36:05,866 INFO : 42% Done
20 Dec 2023 00:36:05,980 INFO : Inserting Anaoc.0020s0683.1.p
20 Dec 2023 00:36:06,026 INFO : 52% Done
20 Dec 2023 00:36:06,373 INFO : Inserting Anaoc.0008s0618.1.p
20 Dec 2023 00:36:06,416 INFO : 62% Done
20 Dec 2023 00:36:06,789 INFO : 70% Done
20 Dec 2023 00:36:06,994 INFO : 80% Done
20 Dec 2023 00:36:07,329 INFO : Done parsing Skyline document.
20 Dec 2023 00:36:07,408 INFO : Calculating fold changes
20 Dec 2023 00:36:07,832 INFO : 98% Done
20 Dec 2023 00:36:07,832 INFO : Done calculating fold changes.
20 Dec 2023 00:36:08,408 INFO : Creating and populating temp tables for Proportion values
20 Dec 2023 00:36:08,570 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
20 Dec 2023 00:36:08,680 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
20 Dec 2023 00:36:08,728 INFO : Cleaning up temp tables
20 Dec 2023 00:36:09,139 INFO : Completed import of Skyline document from HeatedOilSpike-LowTemp_HighTemp_Combined_Final_2022-05-26_12-00-47.sky.zip
20 Dec 2023 00:36:09,141 INFO : 100% Done
20 Dec 2023 00:36:09,145 INFO : Starting import from 20210212 Low range exploration 140K-fragmod_Pub_2023-12-08_16-04-13.sky.zip
20 Dec 2023 00:36:09,147 INFO : Starting to import Skyline document from 20210212 Low range exploration 140K-fragmod_Pub_2023-12-08_16-04-13.sky.zip
20 Dec 2023 00:36:09,209 INFO : Expanding 20191218_Oil-roasted-cashew_FinalDB.blib
20 Dec 2023 00:36:09,306 INFO : Expanding 20191218_Oil-roasted-cashew_FinalDB.redundant.blib
20 Dec 2023 00:36:10,703 INFO : Expanding 20210212 Low range exploration 140K-fragmod_Pub.skyd
20 Dec 2023 00:36:10,807 INFO : Expanding 20210212 Low range exploration 140K-fragmod_Pub.sky.view
20 Dec 2023 00:36:10,812 INFO : Expanding 20210212 Low range exploration 140K-fragmod_Pub.sky
20 Dec 2023 00:36:10,879 INFO : Expanding 20210212 Low range exploration 140K-fragmod_Pub.skyl
20 Dec 2023 00:36:10,887 INFO : 7% Done
20 Dec 2023 00:36:11,350 INFO : Inserting Q8H2B8_ANAOC
20 Dec 2023 00:36:11,367 INFO : 26% Done
20 Dec 2023 00:36:11,485 INFO : Inserting Q8GZP6_ANAOC
20 Dec 2023 00:36:11,502 INFO : 44% Done
20 Dec 2023 00:36:11,618 INFO : 62% Done
20 Dec 2023 00:36:11,719 INFO : Inserting Anaoc.0020s0683.1.p
20 Dec 2023 00:36:11,736 INFO : 80% Done
20 Dec 2023 00:36:11,844 INFO : Done parsing Skyline document.
20 Dec 2023 00:36:11,910 INFO : Calculating fold changes
20 Dec 2023 00:36:11,992 INFO : 89% Done
20 Dec 2023 00:36:11,992 INFO : Done calculating fold changes.
20 Dec 2023 00:36:11,992 INFO : Calculating calibration curves
20 Dec 2023 00:36:12,015 INFO : 92% Done
20 Dec 2023 00:36:12,060 INFO : 95% Done
20 Dec 2023 00:36:12,083 INFO : 98% Done
20 Dec 2023 00:36:12,117 INFO : Done calculating calibration curves.
20 Dec 2023 00:36:12,154 INFO : Creating and populating temp tables for Proportion values
20 Dec 2023 00:36:12,308 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
20 Dec 2023 00:36:12,326 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
20 Dec 2023 00:36:12,333 INFO : Cleaning up temp tables
20 Dec 2023 00:36:12,704 INFO : Completed import of Skyline document from 20210212 Low range exploration 140K-fragmod_Pub_2023-12-08_16-04-13.sky.zip
20 Dec 2023 00:36:12,706 INFO : 100% Done
20 Dec 2023 00:36:12,711 INFO : Starting import from 20210607 Calibration Curve_DilutionDigest_2023-12-11_10-50-40.sky.zip
20 Dec 2023 00:36:12,713 INFO : Starting to import Skyline document from 20210607 Calibration Curve_DilutionDigest_2023-12-11_10-50-40.sky.zip
20 Dec 2023 00:36:12,786 INFO : Expanding 20191218_Oil-roasted-cashew_FinalDB.blib
20 Dec 2023 00:36:12,888 INFO : Expanding 20191218_Oil-roasted-cashew_FinalDB.redundant.blib
20 Dec 2023 00:36:14,327 INFO : Expanding 20210607 Calibration Curve_DilutionDigest.skyd
20 Dec 2023 00:36:14,580 INFO : Expanding 20210607 Calibration Curve_DilutionDigest.sky.view
20 Dec 2023 00:36:14,582 INFO : Expanding 20210607 Calibration Curve_DilutionDigest.sky
20 Dec 2023 00:36:14,718 INFO : Expanding 20210607 Calibration Curve_DilutionDigest.skyl
20 Dec 2023 00:36:14,729 INFO : 7% Done
20 Dec 2023 00:36:15,325 INFO : Inserting Q8H2B8_ANAOC
20 Dec 2023 00:36:15,350 INFO : 26% Done
20 Dec 2023 00:36:15,554 INFO : Inserting Q8GZP6_ANAOC
20 Dec 2023 00:36:15,579 INFO : 43% Done
20 Dec 2023 00:36:15,806 INFO : 62% Done
20 Dec 2023 00:36:16,008 INFO : Inserting Anaoc.0020s0683.1.p
20 Dec 2023 00:36:16,035 INFO : 80% Done
20 Dec 2023 00:36:16,228 INFO : Done parsing Skyline document.
20 Dec 2023 00:36:16,293 INFO : Calculating fold changes
20 Dec 2023 00:36:16,405 INFO : 98% Done
20 Dec 2023 00:36:16,405 INFO : Done calculating fold changes.
20 Dec 2023 00:36:16,759 INFO : Creating and populating temp tables for Proportion values
20 Dec 2023 00:36:16,896 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
20 Dec 2023 00:36:16,927 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
20 Dec 2023 00:36:16,938 INFO : Cleaning up temp tables
20 Dec 2023 00:36:17,302 INFO : Completed import of Skyline document from 20210607 Calibration Curve_DilutionDigest_2023-12-11_10-50-40.sky.zip
20 Dec 2023 00:36:17,303 INFO : 100% Done
20 Dec 2023 00:36:17,308 INFO : Starting import from 20210301 Calibration Dev_DilutionOil_2023-12-11_10-57-35.sky.zip
20 Dec 2023 00:36:17,310 INFO : Starting to import Skyline document from 20210301 Calibration Dev_DilutionOil_2023-12-11_10-57-35.sky.zip
20 Dec 2023 00:36:17,397 INFO : Expanding 20191218_Oil-roasted-cashew_FinalDB.blib
20 Dec 2023 00:36:17,497 INFO : Expanding 20191218_Oil-roasted-cashew_FinalDB.redundant.blib
20 Dec 2023 00:36:19,197 INFO : Expanding 20210301 Calibration Dev_DilutionOil.skyd
20 Dec 2023 00:36:19,301 INFO : Expanding 20210301 Calibration Dev_DilutionOil.sky.view
20 Dec 2023 00:36:19,302 INFO : Expanding 20210301 Calibration Dev_DilutionOil.sky
20 Dec 2023 00:36:19,335 INFO : Expanding 20210301 Calibration Dev_DilutionOil.skyl
20 Dec 2023 00:36:19,401 INFO : 7% Done
20 Dec 2023 00:36:19,830 INFO : Inserting Q8H2B8_ANAOC
20 Dec 2023 00:36:19,847 INFO : 25% Done
20 Dec 2023 00:36:19,953 INFO : Inserting Q8GZP6_ANAOC
20 Dec 2023 00:36:19,968 INFO : 42% Done
20 Dec 2023 00:36:20,080 INFO : 59% Done
20 Dec 2023 00:36:20,184 INFO : Inserting Anaoc.0020s0683.1.p
20 Dec 2023 00:36:20,204 INFO : 80% Done
20 Dec 2023 00:36:20,330 INFO : Done parsing Skyline document.
20 Dec 2023 00:36:20,396 INFO : Calculating fold changes
20 Dec 2023 00:36:20,491 INFO : 98% Done
20 Dec 2023 00:36:20,491 INFO : Done calculating fold changes.
20 Dec 2023 00:36:20,582 INFO : Creating and populating temp tables for Proportion values
20 Dec 2023 00:36:20,725 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
20 Dec 2023 00:36:20,742 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
20 Dec 2023 00:36:20,748 INFO : Cleaning up temp tables
20 Dec 2023 00:36:21,129 INFO : Completed import of Skyline document from 20210301 Calibration Dev_DilutionOil_2023-12-11_10-57-35.sky.zip
20 Dec 2023 00:36:21,131 INFO : 100% Done
20 Dec 2023 00:36:21,154 INFO : Done importing xar
20 Dec 2023 00:36:21,155 INFO : Loading pages and webpart properties
20 Dec 2023 00:36:21,213 INFO : Done importing 3 page(s) with 4 webpart(s)
20 Dec 2023 00:36:21,213 INFO : Loading File Browser config
20 Dec 2023 00:36:21,213 INFO : Done importing File Browser config
20 Dec 2023 00:36:21,214 INFO : Starting Sample Status Data import
20 Dec 2023 00:36:21,215 INFO : No sample types XAR file to process.
20 Dec 2023 00:36:21,215 INFO : Finished importing Sample Status Data
20 Dec 2023 00:36:21,221 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
20 Dec 2023 00:36:21,222 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
20 Dec 2023 00:36:21,223 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
20 Dec 2023 00:36:21,223 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
20 Dec 2023 00:36:21,224 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
20 Dec 2023 00:36:21,224 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
20 Dec 2023 00:36:21,226 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
20 Dec 2023 00:36:21,235 INFO : Moving files to folder /Panorama Public/2023/Nebraska U FARRP - Cashew Targeted Method and creating symlinks
20 Dec 2023 00:36:30,619 INFO : Aligning data files urls in folder: /Panorama Public/2023/Nebraska U FARRP - Cashew Targeted Method
20 Dec 2023 00:36:30,661 INFO : Importing files metadata.
20 Dec 2023 00:36:30,662 INFO :
20 Dec 2023 00:36:30,662 INFO : Experiment import completed successfully.
20 Dec 2023 00:36:30,662 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
20 Dec 2023 00:37:30,635 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
20 Dec 2023 00:37:30,636 INFO :
20 Dec 2023 00:37:30,636 INFO : Checking for library folders.
20 Dec 2023 00:37:30,637 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
20 Dec 2023 00:37:30,659 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
20 Dec 2023 00:37:30,659 INFO :
20 Dec 2023 00:37:30,659 INFO : Finishing up experiment copy.
20 Dec 2023 00:37:30,660 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2023/Nebraska U FARRP - Cashew Targeted Method
20 Dec 2023 00:37:30,661 INFO : Setting version on new experiment to 1
20 Dec 2023 00:37:30,664 INFO : Updating permanent link to point to the new copy of the data.
20 Dec 2023 00:37:30,692 INFO : Removing copy permissions given to Panorama Public
20 Dec 2023 00:37:30,695 INFO : Adding read permissions to all users that are folder admins in the source folder.
20 Dec 2023 00:37:30,696 INFO : Assigning ReaderRole to mdowns2@unl.edu
20 Dec 2023 00:37:30,696 INFO : Assigning PanoramaPublicSubmitterRole to mdowns2@unl.edu
20 Dec 2023 00:37:30,701 INFO : User mdowns2@unl.edu is already a member of group Panorama Public Submitters
20 Dec 2023 00:37:30,701 INFO : Updating the 'Raw Data' tab configuration
20 Dec 2023 00:37:30,702 INFO : Creating a reviewer account.
20 Dec 2023 00:37:30,917 INFO : Created reviewer with email: User panorama+reviewer231@proteinms.net
20 Dec 2023 00:37:30,925 INFO : Adding user panorama+reviewer231@proteinms.net to group Reviewers
20 Dec 2023 00:37:30,926 INFO : Hiding the Data Pipeline tab.
20 Dec 2023 00:37:30,931 INFO : Updating Submission. Setting copiedExperimentId to 1745
20 Dec 2023 00:37:32,777 INFO : Assigning a ProteomeXchange ID.
20 Dec 2023 00:37:34,059 INFO : Assigned ProteomeXchange ID: PXD047985
20 Dec 2023 00:37:34,059 INFO : Assigning a DOI.
20 Dec 2023 00:37:34,954 INFO : Assigned DOI: 10.6069/gx8c-w419
20 Dec 2023 00:37:35,082 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'